https://osiris.eemb.ucsb.edu/wiki/galaxyucsb/index.php?action=history&feed=atom&title=Adding_a_new_permanent_blast_database 2026-05-15T17:53:22Z Revision history for this page on the wiki MediaWiki 1.28.2 https://osiris.eemb.ucsb.edu/wiki/galaxyucsb/index.php?title=Adding_a_new_permanent_blast_database&diff=845&oldid=prev 2012-03-08T16:48:37Z

<p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;' lang='en'> <td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 16:48, 8 March 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l12" >Line 12:</td> <td colspan="2" class="diff-lineno">Line 12:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>blastdb_p.loc</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>blastdb_p.loc</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>As of March 7, 2012, set up are all Non-redundant proteins in Genbank (nr) <del class="diffchange diffchange-inline">and </del>uniref90.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>As of March 7, 2012, set up are<ins class="diffchange diffchange-inline">:</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">&#160; </ins>all Non-redundant proteins in Genbank (nr)</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">&#160; </ins>uniref90.</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">&#160; Lottia gigantea genome: filtered gene predictions</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">&#160; Pinctada fucata genome: predicted transcripts</ins></div></td></tr> </table>

128.111.227.87 https://osiris.eemb.ucsb.edu/wiki/galaxyucsb/index.php?title=Adding_a_new_permanent_blast_database&diff=844&oldid=prev 2012-03-08T04:59:50Z

<p>Created page with &quot;The directory for the formatted blast databases is: /home/galaxy/src/ncbi-blast-2.2.25+/bin/db The path is added to the blastdb.loc file. There is a particular format, not just…&quot;</p> <p><b>New page</b></p><div>The directory for the formatted blast databases is:<br /> /home/galaxy/src/ncbi-blast-2.2.25+/bin/db<br /> <br /> The path is added to the blastdb.loc file. There is a particular format, not just the path, but it is explained in comments in the .loc file.<br /> <br /> There is a different file for protein and for nucleotide databases in the directory:<br /> <br /> /home/galaxy/galaxy-dist/tool-data/<br /> <br /> <br /> blastdb.loc<br /> blastdb_p.loc<br /> <br /> As of March 7, 2012, set up are all Non-redundant proteins in Genbank (nr) and uniref90.</div>

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