Scp upload - Revision history

128.111.227.119 at 00:32, 3 September 2016

2016-09-03T00:32:22Z

Oakley at 22:08, 15 November 2011

2011-11-15T22:08:32Z

Oakley at 22:08, 15 November 2011

2011-11-15T22:08:15Z

Pankey at 21:20, 15 November 2011

2011-11-15T21:20:37Z

Pankey: Created page with "Use '''scp''' (secure copy) to transfer datafiles to the FTP directory within Galaxy on knot. Once the files are transferred, you will see them listed under the 'Files uploaded …"

2011-11-15T21:18:03Z

Created page with "Use '''scp''' (secure copy) to transfer datafiles to the FTP directory within Galaxy on knot. Once the files are transferred, you will see them listed under the 'Files uploaded …"

New page

Use '''scp''' (secure copy) to transfer datafiles to the FTP directory within Galaxy on knot. Once the files are transferred, you will see them listed under the 'Files uploaded via FTP:' when you select Get Data:Upload File tool.

1. From the macroevolution directory which contains your file(s), use '''scp'''.
For instance, to transfer the file 'datafile.fasta' to the Galaxy user 'yourname@lifesci.ucsb.edu':

-bash-3.2$ scp datafile.fasta galaxy@knot.cnsi.ucsb.edu:/home/galaxy/galaxy-dist/database/ftp/yourname\@lifesci.ucsb.edu/

(Note that the @ character requires the preceeding escape character \ in the latter instance because this email address must be understood as the directory rather than an address.)

2. Using Galaxy from your browser, select the tool 'Upload File from your computer' under '''Get Data'''. You will see your scp'd files listed. Select the files you would like to upload and 'Execute'.

@@ Line 2: / Line 2: @@
 . In your unix terminal, navigate to the macroevolution directory which contains your file(s).  Use '''scp''' to copy the file(s) to the appropriate directory on knot.
-For instance, to transfer the file 'datafile.fasta' to the Galaxy user - explained in [[The very basics]] 'yourname@lifesci.ucsb.edu':
+For instance, to transfer the file 'datafile.fasta' to the Galaxy user - explained in [[The very basics]] 'yourname@lifesci.ucsb.edu' or whatever your galaxy2 user name is 'yourlogin@gmail.com':
-    -bash-3.2$ scp datafile.fasta galaxy@knot.cnsi.ucsb.edu:/home/galaxy/galaxy-dist/database/ftp/yourname\@lifesci.ucsb.edu/
+    -bash-3.2$ scp datafile.fasta galaxy2@knot.cnsi.ucsb.edu:/home/galaxy/galaxy-dist/database/ftp/yourname\@lifesci.ucsb.edu/
 (Note that the @ character requires the preceeding escape character \ in the latter instance because this email address must be understood as the directory rather than an address.)

@@ Line 2: / Line 2: @@
 . In your unix terminal, navigate to the macroevolution directory which contains your file(s).  Use '''scp''' to copy the file(s) to the appropriate directory on knot.
-For instance, to transfer the file 'datafile.fasta' to the Galaxy user - explained in [The very basics] 'yourname@lifesci.ucsb.edu':
+For instance, to transfer the file 'datafile.fasta' to the Galaxy user - explained in [[The very basics]] 'yourname@lifesci.ucsb.edu':
     -bash-3.2$ scp datafile.fasta galaxy@knot.cnsi.ucsb.edu:/home/galaxy/galaxy-dist/database/ftp/yourname\@lifesci.ucsb.edu/

@@ Line 2: / Line 2: @@
 . In your unix terminal, navigate to the macroevolution directory which contains your file(s).  Use '''scp''' to copy the file(s) to the appropriate directory on knot.
-For instance, to transfer the file 'datafile.fasta' to the Galaxy user 'yourname@lifesci.ucsb.edu':
+For instance, to transfer the file 'datafile.fasta' to the Galaxy user - explained in [The very basics] 'yourname@lifesci.ucsb.edu':
     -bash-3.2$ scp datafile.fasta galaxy@knot.cnsi.ucsb.edu:/home/galaxy/galaxy-dist/database/ftp/yourname\@lifesci.ucsb.edu/

@@ Line 1: / Line 1: @@
 Use '''scp''' (secure copy) to transfer datafiles to the FTP directory within Galaxy on knot.  Once the files are transferred, you will see them listed under the 'Files uploaded via FTP:' when you select Get Data:Upload File tool.
-. From the macroevolution directory which contains your file(s), use '''scp'''.
+. In your unix terminal, navigate to the macroevolution directory which contains your file(s).  Use '''scp''' to copy the file(s) to the appropriate directory on knot.
 For instance, to transfer the file 'datafile.fasta' to the Galaxy user 'yourname@lifesci.ucsb.edu':
@@ Line 7: / Line 7: @@
 (Note that the @ character requires the preceeding escape character \ in the latter instance because this email address must be understood as the directory rather than an address.)
 .  Using Galaxy from your browser, select the tool 'Upload File from your computer' under '''Get Data'''. You will see your scp'd files listed. Select the files you would like to upload and 'Execute'.