Oakley: Created page with "Here [http://rna-seqblog.com/publications/trinity-%E2%80%93-a-method-for-de-novo-assembly-of-full-length-transcripts/] is a blog post on the basics of Trinity notes: I would run…"

2011-11-11T00:29:19Z

Created page with "Here [http://rna-seqblog.com/publications/trinity-%E2%80%93-a-method-for-de-novo-assembly-of-full-length-transcripts/] is a blog post on the basics of Trinity notes: I would run…"

New page

Here [http://rna-seqblog.com/publications/trinity-%E2%80%93-a-method-for-de-novo-assembly-of-full-length-transcripts/]
is a blog post on the basics of Trinity

notes:
I would run one assembly on default and one reducing the minimum contig length parameter from default (200bp) to 150bp or lower (Dan this might be quite important for your assemblies). It is also possible to vary the paired fragment length (maximum length expected between fragment pairs).

Using Trinity Assembler - Revision history

Oakley: Created page with "Here [http://rna-seqblog.com/publications/trinity-%E2%80%93-a-method-for-de-novo-assembly-of-full-length-transcripts/] is a blog post on the basics of Trinity notes: I would run…"