Difference between revisions of "Galaxy Problems to address"
From Ucsbgalaxy
| Line 9: | Line 9: | ||
* [[ Newbler tool doesn't assemble FASTQ files as it claims to]] | * [[ Newbler tool doesn't assemble FASTQ files as it claims to]] | ||
* [[Newbler parameter '-a' (minimum contig length) not working]] | * [[Newbler parameter '-a' (minimum contig length) not working]] | ||
| + | * iAssembler-medmem not working 9/2012 | ||
| + | * Trinity-largemem: fails because java out of date, needs 1.6 or 1.7 9/2012 | ||
| + | * Trinity-xlargemem: failed when trying to allocate 470GB ram (set for 500GB) 9/2012 | ||
==Resolved== | ==Resolved== | ||
Revision as of 11:06, 26 September 2012
Outstanding
- Upgrade FastQC Tool
- 'Memory leak' type behavior
- Install cron jobs to clear deleted datasets
- Barcode splitter output
- blast2go not working
- FTP connection refused
- Version tracking
- Newbler tool doesn't assemble FASTQ files as it claims to
- Newbler parameter '-a' (minimum contig length) not working
- iAssembler-medmem not working 9/2012
- Trinity-largemem: fails because java out of date, needs 1.6 or 1.7 9/2012
- Trinity-xlargemem: failed when trying to allocate 470GB ram (set for 500GB) 9/2012
