Difference between revisions of "Galaxy Problems to address"
From Ucsbgalaxy
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* [[ Newbler tool doesn't assemble FASTQ files as it claims to]] | * [[ Newbler tool doesn't assemble FASTQ files as it claims to]] | ||
* [[Newbler parameter '-a' (minimum contig length) not working]] | * [[Newbler parameter '-a' (minimum contig length) not working]] | ||
| − | |||
* Trinity-largemem: fails because java out of date, needs 1.6 or 1.7 9/2012 | * Trinity-largemem: fails because java out of date, needs 1.6 or 1.7 9/2012 | ||
* Trinity-xlargemem: failed when trying to allocate 470GB ram (set for 500GB) 9/2012 | * Trinity-xlargemem: failed when trying to allocate 470GB ram (set for 500GB) 9/2012 | ||
==Resolved== | ==Resolved== | ||
Latest revision as of 11:40, 26 September 2012
Outstanding[edit]
- Upgrade FastQC Tool
- 'Memory leak' type behavior
- Install cron jobs to clear deleted datasets
- Barcode splitter output
- blast2go not working
- FTP connection refused
- Version tracking
- Newbler tool doesn't assemble FASTQ files as it claims to
- Newbler parameter '-a' (minimum contig length) not working
- Trinity-largemem: fails because java out of date, needs 1.6 or 1.7 9/2012
- Trinity-xlargemem: failed when trying to allocate 470GB ram (set for 500GB) 9/2012
