Difference between revisions of "Cypridinidae Phylogeny"

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(Data Sources)
(Transcriptome Data)
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* Oakley et al (2013) included Skogsbergia lerneri and Vargula tsujii
 
* Oakley et al (2013) included Skogsbergia lerneri and Vargula tsujii
 
** OET13 included Regier (2010) data in S. lerneri
 
** OET13 included Regier (2010) data in S. lerneri
 +
* von Reumont (2011) included 1 undescribed species. Based on collection locality in Mediterranean, this is likely Skogsbergia [[http://mbe.oxfordjournals.org/content/early/2011/12/20/molbev.msr270.full]]

Revision as of 10:26, 25 September 2013

Data Sources

Morphological matrix

  • Cohen and Morin (2003)
  • Uploaded to MorphoBank
  • Requires conversion of species names to match other data
    • Partly done, but needed for some data partitions
  • TO DO: Create separate partitions for binary and multi

Lisa Torres Matrix

  • Thesis of Vanessa Gonzalez
  • 16S, COI, 12S and H3 genes

Transcriptome Data

  • Oakley et al (2013) included Skogsbergia lerneri and Vargula tsujii
    • OET13 included Regier (2010) data in S. lerneri
  • von Reumont (2011) included 1 undescribed species. Based on collection locality in Mediterranean, this is likely Skogsbergia [[1]]