Difference between revisions of "Cypridinidae Phylogeny"

Revision as of 10:36, 25 September 2013

Cohen and Morin (2003)
Uploaded to MorphoBank
Requires conversion of species names to match other data
- Partly done, but needed for some data partitions
TO DO: Create separate partitions for binary and multi

Oakley et al (2013) included Skogsbergia lerneri and Vargula tsujii [[1]]
- OET13 included Regier (2010) data in S. lerneri
von Reumont (2011) included 1 undescribed species. Based on collection locality in Mediterranean, this is likely Skogsbergia [[2]]

18S
- Mainly from Oakley and Cunningham (2002) [[3]]
- Also Yamaguchi and Endo, but this only has V. hilgendorfii, which is also in O&C02 [[4]]
16S
- Wakayama see table 1 [[5]]

Full mt genomes could be useful and might be present in transcriptomes. Make HMM set for ostracod mt genomes using V. hilgendorfii and Argulus(?)

@@ Line 15: / Line 15: @@
 ** OET13 included Regier (2010) data in S. lerneri
 * von Reumont (2011) included 1 undescribed species. Based on collection locality in Mediterranean, this is likely Skogsbergia [[http://mbe.oxfordjournals.org/content/early/2011/12/20/molbev.msr270.full]]
+===GenBank Data===
+* 18S
+** Mainly from Oakley and Cunningham (2002) [[http://labs.eemb.ucsb.edu/oakley/todd/publications/72]]
+** Also Yamaguchi and Endo, but this only has V. hilgendorfii, which is also in O&C02 [[http://link.springer.com/article/10.1007/s00227-003-1062-3]]
+*16S
+** Wakayama see table 1 [[http://onlinelibrary.wiley.com/doi/10.1111/j.1095-8312.2006.00589.x/full#t1]]
+===TO DO===
+* Full mt genomes could be useful and might be present in transcriptomes. Make HMM set for ostracod mt genomes using V. hilgendorfii and Argulus(?)