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| | == '''Galaxy Topics''' == | | == '''Galaxy Topics''' == |
| − | * [[The very basics]] | + | * [[Using UCSB Galaxy]] |
| − | * [[Uploading data]]
| + | * [[Galaxy illumina Data Processing]] |
| − | * [[Restarting Galaxy]] | + | * [[Galaxy Instances]] |
| − | * [[Using Trinity Assembler]]
| + | * [[New tools since Osiris 1.0]] |
| − | * [[Adding a tool from tool shed]]
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| − | *
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| − | *[[Galaxy Development Priorities]] | |
| − | **[[Regular Expression Search and replace -- Assigned to Karl]] | |
| − | **[[Implement EvolMap -- Assigned to Roger]]
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| − | **[[Implement Hammstr - an external pipeline of tools]]
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| − | **[[Implement Davis' Illumina Scripts]]
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| − | **[[Implement RAxML]]
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| − | **[[Implement Beast]]
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| − | **[[Implement r8s]]
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| − | **[[Implement sequence alignment tools, MUSCLE MAFFT PROALIGN]]
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| − | **[[Implement phylogenetics scripts like format converters and concatenation tools]]
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| − | **[[Implement TransAbyss pipeline]]
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| − | **[[Implement NCBI's tools from SRA Toolkit]]
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| − | * [[Galaxy Problems to address]]
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| − | ** [['Memory leak' type behavior]]
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| − | ** [[Install cron jobs to clear deleted datasets]]
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| − | ** [[Barcode splitter output]]
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| − | ** [[blast2go not working]]
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| − | ** [[FTP connection refused]]
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| − | ** [[Version tracking]]
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| − | ** [[ Newbler tool doesn't recognize FASTQ files as it claims to]]
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