Difference between revisions of "Vargula tsujii"
From Ucsbgalaxy
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[http://knot.cnsi.ucsb.edu:8080/u/ostratodd/h/vargula-tsujii-454] | [http://knot.cnsi.ucsb.edu:8080/u/ostratodd/h/vargula-tsujii-454] | ||
| − | There are 8 isotigs retrieved with an E-value of 0.001 | + | There are 8 isotigs retrieved with an E-value of 0.001, when blasting the transcriptome with Vargula hilgendorfii luciferase. When blasted back to GenBank, all 8 of these have strong similarity to known ostracod luciferases. |
Revision as of 02:46, 16 November 2011
We conducted 454 sequencing on bodies minus eyes. The specimens were collected from Catalina Island, with specific data available on the phylogeny website.
I've made a galaxy history to assemble the transcriptome and look for luciferase genes [1]
There are 8 isotigs retrieved with an E-value of 0.001, when blasting the transcriptome with Vargula hilgendorfii luciferase. When blasted back to GenBank, all 8 of these have strong similarity to known ostracod luciferases.
