Difference between revisions of "Galaxy Tool Tips and Troubleshooting"
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(Created page with "== Escaped Characters == When Galaxy runs string values from the UI in a command for a tool, it first escapes some characters to protect against injection attacks. For instance,…") |
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== Escaped Characters == | == Escaped Characters == | ||
− | When Galaxy | + | When Galaxy submits string values from the UI to a tool's config file, it first escapes some characters to protect against injection attacks. |
− | For instance, if a user inputs the character '#' Galaxy will convert it into '__pd__' before | + | For instance, if a user inputs the character '#' Galaxy will convert it into '__pd__' before passing the string into a tool's XML config variables. |
− | + | The full list of escaped characters can be found in galaxy-dist/lib/galaxy/util/__init__.py under the name mapped_chars. | |
For reference the full list as of 11/23/2011 is: | For reference the full list as of 11/23/2011 is: |
Latest revision as of 01:26, 24 November 2011
Escaped Characters[edit]
When Galaxy submits string values from the UI to a tool's config file, it first escapes some characters to protect against injection attacks.
For instance, if a user inputs the character '#' Galaxy will convert it into '__pd__' before passing the string into a tool's XML config variables.
The full list of escaped characters can be found in galaxy-dist/lib/galaxy/util/__init__.py under the name mapped_chars.
For reference the full list as of 11/23/2011 is:
mapped_chars = { '>' :'__gt__', '<' :'__lt__', "'" :'__sq__', '"' :'__dq__', '[' :'__ob__', ']' :'__cb__', '{' :'__oc__', '}' :'__cc__', '@' : '__at__', '\n' : '__cn__', '\r' : '__cr__', '\t' : '__tc__', '#' : '__pd__' }