Difference between revisions of "Adding a new permanent blast database"
From Ucsbgalaxy
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| − | As of March 7, 2012, set up are all Non-redundant proteins in Genbank (nr) | + | As of March 7, 2012, set up are: |
| + | all Non-redundant proteins in Genbank (nr) | ||
| + | uniref90. | ||
| + | Lottia gigantea genome: filtered gene predictions | ||
| + | Pinctada fucata genome: predicted transcripts | ||
Latest revision as of 09:48, 8 March 2012
The directory for the formatted blast databases is: /home/galaxy/src/ncbi-blast-2.2.25+/bin/db
The path is added to the blastdb.loc file. There is a particular format, not just the path, but it is explained in comments in the .loc file.
There is a different file for protein and for nucleotide databases in the directory:
/home/galaxy/galaxy-dist/tool-data/
blastdb.loc
blastdb_p.loc
As of March 7, 2012, set up are:
all Non-redundant proteins in Genbank (nr) uniref90. Lottia gigantea genome: filtered gene predictions Pinctada fucata genome: predicted transcripts
