Difference between revisions of "Lab Papers"

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Google site with total number of citations to our lab's papers [http://scholar.google.com/citations?user=kztqPjYAAAAJ]
 
Google site with total number of citations to our lab's papers [http://scholar.google.com/citations?user=kztqPjYAAAAJ]
  
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1. P. Beldade et al.,  (2011).
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Dispersal between Shallow and Abyssal Seas and Evolutionary Loss and Regain of Compound Eyes in Cylindroleberidid Ostracods: Conflicting Conclusions from Different Comparative Methods.
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2. M. W. Cadotte, B. J. Cardinale, T. H. Oakley, Proceedings of the National Academy of Sciences 105, 17012 (2008).
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AE Syme, TH Oakley
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3. M. W. Cadotte, J. Cavender-Bares, D. Tilman, T. H. Oakley, PLoS One 4, e5695 (2009).
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Systematic biology 2011
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4. M. W. Cadotte et al., Ecology letters 13, 96 (2010).
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Understanding the dermal light sense in the context of integrative photoreceptor cell biology
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5. J. K. Colbourne et al., Science 331, 555 (2011).
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M DESMOND RAMIREZ, DI SPEISER, M SABRINA PANKEY, TH OAKLEY
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6. C. W. Cunningham, K. E. Omland, T. H. Oakley, Trends in Ecology & Evolution 13, 361 (1998).
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Visual neuroscience 28 (04), 265-279 2 2011
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7. M. DESMOND RAMIREZ, D. I. SPEISER, M. SABRINA PANKEY, T. H. OAKLEY, Visual Neurosci 28, 265 (2011).
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Evolution of Opsins
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8. M. Domanico, R. Phillips, T. Oakley, Canadian Journal of Fisheries and Aquatic Sciences 54, 1865 (1997).
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TH Oakley, DC Plachetzki, SB Santa Barbara
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9. N. D. Larusso, B. E. Ruttenberg, A. K. Singh, T. H. Oakley, Journal of molecular evolution 66, 417 (2008).
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The Retina and Its Disorders, 205 2011
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10. C. Lee, S. Blay, A. Ø. Mooers, A. Singh, T. H. Oakley, Evolutionary Bioinformatics Online 2, 183 (2006).
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Published by Oxford University Press 2011.
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11. C. Lee, S. Blay, A. Ø. Mooers, A. Singh, T. H. Oakley, Evolutionary Bioinformatics 2, 183 (2006).
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P Beldade, A Briscoe, R Bush, CD Bustamante, DL Crawford, CF Delwiche, AJ ... 2011
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12. K. E. Lum, A. E. Syme, A. K. SCHWAB, T. H. OAKLEY, Zootaxa 1684, 35 (2008).
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The ecoresponsive genome of Daphnia pulex
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13. P. Moran et al., Gene 194, 9 (1997).
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JK Colbourne, ME Pfrender, D Gilbert, WK Thomas, A Tucker, TH Oakley, S ...
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14. T. Oakley, D. Plachetzki, S. B. Santa Barbara, The Retina and Its Disorders, 205 (2011).
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Science 331 (6017), 555 41 2011
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15. T. H. Oakley, University of Wisconsin--Milwaukee (1996).
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The Amphimedon queenslandica genome and the evolution of animal complexity
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16. T. H. Oakley, Integrative and comparative biology 43, 522 (2003).
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M Srivastava, O Simakov, J Chapman, B Fahey, MEA Gauthier, T Mitros, GS ...
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17. T. H. Oakley, TRENDS in Ecology and Evolution 18, 623 (2003).
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Nature 466 (7307), 720-726 74 2010
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18. T. H. Oakley, Comments&# 174; on Theoretical Biology 8, 609 (2003).
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The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway
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19. T. H. Oakley, Hydrobiologia 538, 179 (2005).
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DC Plachetzki, CR Fong, TH Oakley
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20. T. H. Oakley, Evolution & development 9, 523 (2007).
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Proceedings of the Royal Society B: Biological Sciences 277 (1690), 1963 3 2010
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21. T. H. Oakley, Evolution & development 9, 514 (2007).
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Evolutionary expansion and specialization of the PDZ domains
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22. T. H. Oakley, Evolution: Education and Outreach 1, 548 (2008).
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O Sakarya, C Conaco, Ö Eğecioğlu, SA Solla, TH Oakley, KS Kosik
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23. T. H. Oakley,  (2009).
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Molecular biology and evolution 27 (5), 1058-1069 7 2010
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24. T. H. Oakley, D. U. D. o. Biology, Phylogenetic reconstruction of ancestral character states.  (Duke University, 2001).
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Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach
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25. T. H. Oakley, C. W. Cunningham, Evolution 54, 397 (2000).
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A Rivera, MS Pankey, D Plachetzki, C Villacorta, A Syme, J Serb, A Omilian ...
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26. T. H. Oakley, C. W. Cunningham, Proceedings of the National Academy of Sciences 99, 1426 (2002).
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BMC evolutionary biology 10 (1), 123 1 2010
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27. T. H. Oakley, Z. Gu, E. Abouheif, N. H. Patel, W. H. Li, Molecular biology and evolution 22, 40 (2005).
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Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history
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28. T. H. Oakley, D. R. Huber, Journal of molecular evolution 59, 239 (2004).
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MW Cadotte, T Jonathan Davies, J Regetz, SW Kembel, E Cleland, TH Oakley
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29. T. H. Oakley, B. Østman, A. C. V. Wilson, Proceedings of the National Academy of Sciences 103, 11637 (2006).
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Ecology letters 13 (1), 96-105 27 2010
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30. T. H. Oakley, M. S. Pankey, Evolution: Education and Outreach 1, 390 (2008).
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Evidence for light perception in a bioluminescent organ
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31. T. H. Oakley, R. B. Phillips, Molecular Phylogenetics and Evolution 11, 381 (1999).
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D Tong, NS Rozas, TH Oakley, J Mitchell, NJ Colley, MJ McFall-Ngai
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32. T. H. Oakley, D. C. Plachetzki, A. S. Rivera, Arthropod structure & development 36, 386 (2007).
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Proceedings of the National Academy of Sciences 106 (24), 9836 12 2009
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33. T. H. Oakley, A. S. Rivera, Current opinion in genetics & development 18, 479 (2008).
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Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity
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34. S. Patek, T. Oakley, Evolution 57, 2082 (2003).
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MW Cadotte, J Cavender-Bares, D Tilman, TH Oakley
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35. R. Phillips, T. Oakley, E. Davis, Journal of fish biology 47, 956 (1995).
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PLoS One 4 (5), e5695 37 2009
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36. R. Phillips, T. Oakley, T. Kocher, Molecular systematics of fishes. Academic Press, London, (1997).
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Ontogeny of sexual dimorphism via tissue duplication in an ostracod (Crustacea)
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37. D. C. Plachetzki, B. M. Degnan, T. H. Oakley, PLoS One 2, e1054 (2007).
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AS Rivera, TH Oakley
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38. D. C. Plachetzki, C. R. Fong, T. H. Oakley, Proceedings of the Royal Society B: Biological Sciences 277, 1963 (2010).
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Evolution & Development 11 (2), 233-243 1 2009
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39. D. C. Plachetzki, T. H. Oakley, Integrative and Comparative Biology 47, 759 (2007).
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A Critique of Experimental Phylogenetics
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40. D. C. Plachetzki, J. M. Serb, T. H. Oakley, Trends in Ecology & Evolution 20, 465 (2005).
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TH Oakley
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41. K. M. Reed, T. H. Oakley, R. B. Phillips, Gene 186, 7 (1997).
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University of California Press 2009
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42. A. Rivera et al., BMC evolutionary biology 10, 123 (2010).
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Genomics and the evolutionary origins of nervous system complexity
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43. A. S. Rivera, T. H. Oakley, Evolution & development 11, 233 (2009).
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TH Oakley, AS Rivera
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44. M. R. Rose, T. H. Oakley, Biology direct 2, 30 (2007).
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Current opinion in genetics & development 18 (6), 479-492 2 2008
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45. O. Sakarya et al., PLoS One 2, e506 (2007).
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Evolutionary history and the effect of biodiversity on plant productivity
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46. O. Sakarya et al., Molecular biology and evolution 27, 1058 (2010).
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MW Cadotte, BJ Cardinale, TH Oakley
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47. O. Sakarya, K. S. Kosik, T. H. Oakley, Bioinformatics 24, 606 (2008).
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Proceedings of the National Academy of Sciences 105 (44), 17012 63 2008
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48. J. M. Serb, T. H. Oakley, Bioessays 27, 1158 (2005).
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Jay Hosler, An Evolutionary Novelty: Optical Allusions
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49. R. A. Setterquist, G. K. Smith, T. H. Oakley, Y. H. Lee, G. E. Fox, Gene 183, 237 (1996).
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TH Oakley
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50. M. Srivastava et al., Nature 466, 720 (2010).
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Evolution: Education and Outreach 1 (4), 548-551 2008
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51. A. E. Syme, T. H. Oakley, Systematic biology,  (2011).
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Opening the “black box”: the genetic and biochemical basis of eye evolution
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52. O. Tinn, T. H. Oakley, Molecular phylogenetics and evolution 48, 157 (2008).
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TH Oakley, MS Pankey
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53. D. Tong et al., Proceedings of the National Academy of Sciences 106, 9836 (2009).
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Evolution: Education and Outreach 1 (4), 390-402 4 2008
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54. D. Wang et al., Molecular biology and evolution 21, 295 (2004).
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Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea)
 
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O Tinn, TH Oakley
 
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Molecular phylogenetics and evolution 48 (1), 157-167 7 2008
 
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Type II opsins: evolutionary origin by internal domain duplication?
 
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ND Larusso, BE Ruttenberg, AK Singh, TH Oakley
 
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Journal of molecular evolution 66 (5), 417-423 7 2008
 

Revision as of 15:31, 17 November 2011

Google site with total number of citations to our lab's papers [1]

1. P. Beldade et al., (2011). 2. M. W. Cadotte, B. J. Cardinale, T. H. Oakley, Proceedings of the National Academy of Sciences 105, 17012 (2008). 3. M. W. Cadotte, J. Cavender-Bares, D. Tilman, T. H. Oakley, PLoS One 4, e5695 (2009). 4. M. W. Cadotte et al., Ecology letters 13, 96 (2010). 5. J. K. Colbourne et al., Science 331, 555 (2011). 6. C. W. Cunningham, K. E. Omland, T. H. Oakley, Trends in Ecology & Evolution 13, 361 (1998). 7. M. DESMOND RAMIREZ, D. I. SPEISER, M. SABRINA PANKEY, T. H. OAKLEY, Visual Neurosci 28, 265 (2011). 8. M. Domanico, R. Phillips, T. Oakley, Canadian Journal of Fisheries and Aquatic Sciences 54, 1865 (1997). 9. N. D. Larusso, B. E. Ruttenberg, A. K. Singh, T. H. Oakley, Journal of molecular evolution 66, 417 (2008). 10. C. Lee, S. Blay, A. Ø. Mooers, A. Singh, T. H. Oakley, Evolutionary Bioinformatics Online 2, 183 (2006). 11. C. Lee, S. Blay, A. Ø. Mooers, A. Singh, T. H. Oakley, Evolutionary Bioinformatics 2, 183 (2006). 12. K. E. Lum, A. E. Syme, A. K. SCHWAB, T. H. OAKLEY, Zootaxa 1684, 35 (2008). 13. P. Moran et al., Gene 194, 9 (1997). 14. T. Oakley, D. Plachetzki, S. B. Santa Barbara, The Retina and Its Disorders, 205 (2011). 15. T. H. Oakley, University of Wisconsin--Milwaukee (1996). 16. T. H. Oakley, Integrative and comparative biology 43, 522 (2003). 17. T. H. Oakley, TRENDS in Ecology and Evolution 18, 623 (2003). 18. T. H. Oakley, Comments&# 174; on Theoretical Biology 8, 609 (2003). 19. T. H. Oakley, Hydrobiologia 538, 179 (2005). 20. T. H. Oakley, Evolution & development 9, 523 (2007). 21. T. H. Oakley, Evolution & development 9, 514 (2007). 22. T. H. Oakley, Evolution: Education and Outreach 1, 548 (2008). 23. T. H. Oakley, (2009). 24. T. H. Oakley, D. U. D. o. Biology, Phylogenetic reconstruction of ancestral character states. (Duke University, 2001). 25. T. H. Oakley, C. W. Cunningham, Evolution 54, 397 (2000). 26. T. H. Oakley, C. W. Cunningham, Proceedings of the National Academy of Sciences 99, 1426 (2002). 27. T. H. Oakley, Z. Gu, E. Abouheif, N. H. Patel, W. H. Li, Molecular biology and evolution 22, 40 (2005). 28. T. H. Oakley, D. R. Huber, Journal of molecular evolution 59, 239 (2004). 29. T. H. Oakley, B. Østman, A. C. V. Wilson, Proceedings of the National Academy of Sciences 103, 11637 (2006). 30. T. H. Oakley, M. S. Pankey, Evolution: Education and Outreach 1, 390 (2008). 31. T. H. Oakley, R. B. Phillips, Molecular Phylogenetics and Evolution 11, 381 (1999). 32. T. H. Oakley, D. C. Plachetzki, A. S. Rivera, Arthropod structure & development 36, 386 (2007). 33. T. H. Oakley, A. S. Rivera, Current opinion in genetics & development 18, 479 (2008). 34. S. Patek, T. Oakley, Evolution 57, 2082 (2003). 35. R. Phillips, T. Oakley, E. Davis, Journal of fish biology 47, 956 (1995). 36. R. Phillips, T. Oakley, T. Kocher, Molecular systematics of fishes. Academic Press, London, (1997). 37. D. C. Plachetzki, B. M. Degnan, T. H. Oakley, PLoS One 2, e1054 (2007). 38. D. C. Plachetzki, C. R. Fong, T. H. Oakley, Proceedings of the Royal Society B: Biological Sciences 277, 1963 (2010). 39. D. C. Plachetzki, T. H. Oakley, Integrative and Comparative Biology 47, 759 (2007). 40. D. C. Plachetzki, J. M. Serb, T. H. Oakley, Trends in Ecology & Evolution 20, 465 (2005). 41. K. M. Reed, T. H. Oakley, R. B. Phillips, Gene 186, 7 (1997). 42. A. Rivera et al., BMC evolutionary biology 10, 123 (2010). 43. A. S. Rivera, T. H. Oakley, Evolution & development 11, 233 (2009). 44. M. R. Rose, T. H. Oakley, Biology direct 2, 30 (2007). 45. O. Sakarya et al., PLoS One 2, e506 (2007). 46. O. Sakarya et al., Molecular biology and evolution 27, 1058 (2010). 47. O. Sakarya, K. S. Kosik, T. H. Oakley, Bioinformatics 24, 606 (2008). 48. J. M. Serb, T. H. Oakley, Bioessays 27, 1158 (2005). 49. R. A. Setterquist, G. K. Smith, T. H. Oakley, Y. H. Lee, G. E. Fox, Gene 183, 237 (1996). 50. M. Srivastava et al., Nature 466, 720 (2010). 51. A. E. Syme, T. H. Oakley, Systematic biology, (2011). 52. O. Tinn, T. H. Oakley, Molecular phylogenetics and evolution 48, 157 (2008). 53. D. Tong et al., Proceedings of the National Academy of Sciences 106, 9836 (2009). 54. D. Wang et al., Molecular biology and evolution 21, 295 (2004).

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