Difference between revisions of "Version tracking"
From Ucsbgalaxy
(Created page with " I just noticed there is a standard for installing dependancies, explained here: [http://wiki.g2.bx.psu.edu/News%20Briefs/2010_11_24?highlight=%28tool_dependency_dir%29] I did n…") |
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I just noticed there is a standard for installing dependancies, explained here: | I just noticed there is a standard for installing dependancies, explained here: | ||
[http://wiki.g2.bx.psu.edu/News%20Briefs/2010_11_24?highlight=%28tool_dependency_dir%29] | [http://wiki.g2.bx.psu.edu/News%20Briefs/2010_11_24?highlight=%28tool_dependency_dir%29] | ||
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I learned in from an email to galaxy-dev | I learned in from an email to galaxy-dev | ||
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| + | a) I hadn't set tool_dependency_dir as I didn't know about it | ||
| + | b) if I had set it, I was installing tools to | ||
| + | $SW/tool-name/version-number/ but the default tool wrappers in | ||
| + | galaxy-dist don't have version numbers set, so they will just look in | ||
| + | $SW/tool-name/ . | ||
| + | Can I suggest this be added to the wiki somewhere under the Admin | ||
| + | pages? Apologies if it's there, I couldn't find it except under News | ||
| + | Briefs at http://wiki.g2.bx.psu.edu/News%20Briefs/2010_11_24?highlight=%28tool_dependency_dir%29 | ||
Latest revision as of 23:08, 15 November 2011
I just noticed there is a standard for installing dependancies, explained here: [1]
I did not follow this when installing tools, and this should be followed as a standard.
I learned in from an email to galaxy-dev
a) I hadn't set tool_dependency_dir as I didn't know about it b) if I had set it, I was installing tools to $SW/tool-name/version-number/ but the default tool wrappers in galaxy-dist don't have version numbers set, so they will just look in $SW/tool-name/ . Can I suggest this be added to the wiki somewhere under the Admin pages? Apologies if it's there, I couldn't find it except under News Briefs at http://wiki.g2.bx.psu.edu/News%20Briefs/2010_11_24?highlight=%28tool_dependency_dir%29
