Program to find probes
From Ucsbgalaxy
Revision as of 13:10, 20 February 2014 by 128.111.227.66 (talk)
project in /home/likewise-open/ADS/oakley/labdata/OpsinGenomes
Program flow:
- 1. Creates a BLAST+ database using sequence.fasta
- 2. Reads in sequence.fasta sequence by sequence
- 2b. creates a hash of all sequence ids to false
- 3. Reads through the sequence.fasta file again, this time running blastn on each sequence
- 3b. For each hit, set the hash with the display_id as key to true
