Cypridinidae Phylogeny

Data Sources

Morphological matrix

• Cohen and Morin (2003)
• Uploaded to MorphoBank
• Requires conversion of species names to match other data
  • Partly done, but needed for some data partitions
• TO DO: Create separate partitions for binary and multi

Lisa Torres Matrix

• Thesis of Vanessa Gonzalez
• 16S, COI, 12S and H3 genes

Transcriptome Data

• Oakley et al (2013) included Skogsbergia lerneri and Vargula tsujii [[1]]
  • OET13 included Regier (2010) data in S. lerneri
• von Reumont (2011) included 1 undescribed species. Based on collection locality in Mediterranean, this is likely Skogsbergia [[2]]

GenBank Data

• 18S
  • Mainly from Oakley and Cunningham (2002) [[3]]
  • Also Yamaguchi and Endo, but this only has V. hilgendorfii, which is also in O&C02 [[4]]
• 16S
  • Wakayama see table 1 [[5]]

TO DO

• Full mt genomes could be useful and might be present in transcriptomes. Make HMM set for ostracod mt genomes using V. hilgendorfii and Argulus(?)