Program to find probes
From Ucsbgalaxy
Revision as of 13:08, 20 February 2014 by 128.111.227.66 (talk) (Created page with "project in /home/likewise-open/ADS/oakley/labdata/OpsinGenomes Program flow: 1. Creates a BLAST+ database using sequence.fasta 2. Reads in sequence.fasta sequence by sequence 2…")
project in /home/likewise-open/ADS/oakley/labdata/OpsinGenomes
Program flow: 1. Creates a BLAST+ database using sequence.fasta 2. Reads in sequence.fasta sequence by sequence 2b. creates a hash of all sequence ids to false 3. Reads through the sequence.fasta file again, this time running blastn on each sequence 3b. For each hit, set the hash with the display_id as key to true