Adding a new permanent blast database
From Ucsbgalaxy
Revision as of 21:59, 7 March 2012 by 128.111.61.30 (talk) (Created page with "The directory for the formatted blast databases is: /home/galaxy/src/ncbi-blast-2.2.25+/bin/db The path is added to the blastdb.loc file. There is a particular format, not just…")
The directory for the formatted blast databases is: /home/galaxy/src/ncbi-blast-2.2.25+/bin/db
The path is added to the blastdb.loc file. There is a particular format, not just the path, but it is explained in comments in the .loc file.
There is a different file for protein and for nucleotide databases in the directory:
/home/galaxy/galaxy-dist/tool-data/
blastdb.loc
blastdb_p.loc
As of March 7, 2012, set up are all Non-redundant proteins in Genbank (nr) and uniref90.
