Difference between revisions of "UCSB Galaxy Documentation"
From Ucsbgalaxy
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**[[Implement Hammstr - an external pipeline of tools]] | **[[Implement Hammstr - an external pipeline of tools]] | ||
**[[Implement Davis' Illumina Scripts]] | **[[Implement Davis' Illumina Scripts]] | ||
| + | **[[Implement RAxML]] | ||
**[[Implement Beast]] | **[[Implement Beast]] | ||
**[[Implement r8s]] | **[[Implement r8s]] | ||
Revision as of 18:54, 10 November 2011
Galaxy Topics
- The very basics
- Uploading data
- Using Trinity Assembler
- Adding a tool from tool shed
- Galaxy Development Priorities
- Regular Expression Search and replace
- Implement EvolMap
- Implement Hammstr - an external pipeline of tools
- Implement Davis' Illumina Scripts
- Implement RAxML
- Implement Beast
- Implement r8s
- Implement sequence alignment tools, MUSCLE MAFFT PROALIGN
- Implement phylogenetics scripts like format converters
- Implement TransAbyss pipeline
- Galaxy Problems to address
