Difference between revisions of "UCSB Galaxy Documentation"
From Ucsbgalaxy
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**[[Implement phylogenetics scripts like format converters and concatenation tools]] | **[[Implement phylogenetics scripts like format converters and concatenation tools]] | ||
**[[Implement TransAbyss pipeline]] | **[[Implement TransAbyss pipeline]] | ||
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* [[Galaxy Problems to address]] | * [[Galaxy Problems to address]] | ||
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Revision as of 18:05, 15 November 2011
Galaxy Topics
- The very basics
- Uploading data
- Restarting Galaxy
- Using Trinity Assembler
- Adding a tool from tool shed
- Galaxy Development Priorities
- Regular Expression Search and replace -- Assigned to Karl
- Implement EvolMap -- Assigned to Roger
- Implement Hammstr - an external pipeline of tools
- Implement Davis' Illumina Scripts
- Implement RAxML
- Implement Beast
- Implement r8s
- Implement sequence alignment tools, MUSCLE MAFFT PROALIGN
- Implement phylogenetics scripts like format converters and concatenation tools
- Implement TransAbyss pipeline
- Implement NCBI's tools from SRA Toolkit
- Galaxy Problems to address
