Difference between revisions of "UCSB Galaxy Documentation"
From Ucsbgalaxy
| Line 5: | Line 5: | ||
* [[Adding a tool from tool shed]] | * [[Adding a tool from tool shed]] | ||
* | * | ||
| + | *[[Galaxy Development Priorities]] | ||
| + | **[[Regular Expression Search and replace]] | ||
| + | **[[Implement EvolMap]] | ||
| + | **[[Implement Hammstr - an external pipeline of tools]] | ||
| + | **[[Implement Davis' Illumina Scripts]] | ||
| + | **[[Implement Beast]] | ||
| + | **[[Implement r8s]] | ||
| + | **[[Implement sequence alignment tools, MUSCLE MAFFT PROALIGN]} | ||
| + | **[[Implement phylogenetics scripts like format converters]] | ||
| + | **[[Implement TransAbyss pipeline]] | ||
* [[Galaxy Problems to address]] | * [[Galaxy Problems to address]] | ||
** [['Memory leak' type behavior]] | ** [['Memory leak' type behavior]] | ||
| + | ** [[Barcode splitter output]] | ||
| + | ** [[blast2go not working]] | ||
Revision as of 18:53, 10 November 2011
Galaxy Topics
- The very basics
- Uploading data
- Using Trinity Assembler
- Adding a tool from tool shed
- Galaxy Development Priorities
- Regular Expression Search and replace
- Implement EvolMap
- Implement Hammstr - an external pipeline of tools
- Implement Davis' Illumina Scripts
- Implement Beast
- Implement r8s
- [[Implement sequence alignment tools, MUSCLE MAFFT PROALIGN]}
- Implement phylogenetics scripts like format converters
- Implement TransAbyss pipeline
- Galaxy Problems to address
