Difference between revisions of "UCSB Galaxy Documentation"
From Ucsbgalaxy
| Line 14: | Line 14: | ||
**[[Implement r8s]] | **[[Implement r8s]] | ||
**[[Implement sequence alignment tools, MUSCLE MAFFT PROALIGN]] | **[[Implement sequence alignment tools, MUSCLE MAFFT PROALIGN]] | ||
| − | **[[Implement phylogenetics scripts like format converters]] | + | **[[Implement phylogenetics scripts like format converters and concatenation tools]] |
**[[Implement TransAbyss pipeline]] | **[[Implement TransAbyss pipeline]] | ||
* [[Galaxy Problems to address]] | * [[Galaxy Problems to address]] | ||
Revision as of 18:54, 10 November 2011
Galaxy Topics
- The very basics
- Uploading data
- Using Trinity Assembler
- Adding a tool from tool shed
- Galaxy Development Priorities
- Regular Expression Search and replace
- Implement EvolMap
- Implement Hammstr - an external pipeline of tools
- Implement Davis' Illumina Scripts
- Implement RAxML
- Implement Beast
- Implement r8s
- Implement sequence alignment tools, MUSCLE MAFFT PROALIGN
- Implement phylogenetics scripts like format converters and concatenation tools
- Implement TransAbyss pipeline
- Galaxy Problems to address
