Difference between revisions of "Opsins from full genomes"
From Ucsbgalaxy
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1. Downloaded Metazoa genomes from ensembl [http://metazoa.ensembl.org/info/data/ftp/index.html] on Jan 31, 2013. There were 51 genomes. I downloaded the predicted cDNA from each genome using recursive wget on the ftp site, and the option --accept *.cdna.* These are saved on osiris in oakley user under the directory OpsinGenomes | 1. Downloaded Metazoa genomes from ensembl [http://metazoa.ensembl.org/info/data/ftp/index.html] on Jan 31, 2013. There were 51 genomes. I downloaded the predicted cDNA from each genome using recursive wget on the ftp site, and the option --accept *.cdna.* These are saved on osiris in oakley user under the directory OpsinGenomes | ||
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| + | [[list of metazoa genomes for opsinomics]] | ||
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2. unzipped all sequences | 2. unzipped all sequences | ||
3. combined into one database for blast | 3. combined into one database for blast | ||
Latest revision as of 12:31, 31 January 2014
1. Downloaded Metazoa genomes from ensembl [1] on Jan 31, 2013. There were 51 genomes. I downloaded the predicted cDNA from each genome using recursive wget on the ftp site, and the option --accept *.cdna.* These are saved on osiris in oakley user under the directory OpsinGenomes
list of metazoa genomes for opsinomics
2. unzipped all sequences
3. combined into one database for blast
