Difference between revisions of "UCSB Galaxy Documentation"
From Ucsbgalaxy
| Line 17: | Line 17: | ||
**[[Implement phylogenetics scripts like format converters and concatenation tools]] | **[[Implement phylogenetics scripts like format converters and concatenation tools]] | ||
**[[Implement TransAbyss pipeline]] | **[[Implement TransAbyss pipeline]] | ||
| + | **[[Create conversion tool for SRA files to SFF or FASTQ formats]] | ||
* [[Galaxy Problems to address]] | * [[Galaxy Problems to address]] | ||
** [['Memory leak' type behavior]] | ** [['Memory leak' type behavior]] | ||
Revision as of 17:13, 15 November 2011
Galaxy Topics
- The very basics
- Uploading data
- Restarting Galaxy
- Using Trinity Assembler
- Adding a tool from tool shed
- Galaxy Development Priorities
- Regular Expression Search and replace -- Assigned to Karl
- Implement EvolMap -- Assigned to Roger
- Implement Hammstr - an external pipeline of tools
- Implement Davis' Illumina Scripts
- Implement RAxML
- Implement Beast
- Implement r8s
- Implement sequence alignment tools, MUSCLE MAFFT PROALIGN
- Implement phylogenetics scripts like format converters and concatenation tools
- Implement TransAbyss pipeline
- Create conversion tool for SRA files to SFF or FASTQ formats
- Galaxy Problems to address
