Difference between revisions of "UCSB Galaxy Documentation"
From Ucsbgalaxy
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** [[FTP connection refused]] | ** [[FTP connection refused]] | ||
| + | ** [[ Newbler tool doesn't recognize FASTQ files as it claims to]] | ||
Revision as of 17:59, 15 November 2011
Galaxy Topics
- The very basics
- Uploading data
- Restarting Galaxy
- Using Trinity Assembler
- Adding a tool from tool shed
- Galaxy Development Priorities
- Regular Expression Search and replace -- Assigned to Karl
- Implement EvolMap -- Assigned to Roger
- Implement Hammstr - an external pipeline of tools
- Implement Davis' Illumina Scripts
- Implement RAxML
- Implement Beast
- Implement r8s
- Implement sequence alignment tools, MUSCLE MAFFT PROALIGN
- Implement phylogenetics scripts like format converters and concatenation tools
- Implement TransAbyss pipeline
- Create conversion tool for SRA files to SFF or FASTQ formats
- Galaxy Problems to address
