UCSB Galaxy Documentation
From Ucsbgalaxy
Galaxy Topics
- The very basics
- Uploading data
- Restarting Galaxy
- Using Trinity Assembler
- Adding a tool from tool shed
- Galaxy Development Priorities
- Regular Expression Search and replace -- Assigned to Karl
- Implement EvolMap -- Assigned to Roger
- Implement Hammstr - an external pipeline of tools
- Implement Davis' Illumina Scripts
- Implement RAxML
- Implement Beast
- Implement r8s
- Implement sequence alignment tools, MUSCLE MAFFT PROALIGN
- Implement phylogenetics scripts like format converters and concatenation tools
- Implement TransAbyss pipeline
- Implement NCBI's tools from SRA Toolkit
- Galaxy Problems to address
