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From Ucsbgalaxy
- 'Memory leak' type behavior
- 'Scrunch' assay
- 6-gene phylo grid
- Acanthopleura
- Adding a new permanent blast database
- Adventures in MySQL
- Algae protocols
- Algal RNA Extraction
- Analyzing Behavioral Data in R
- Antibody list
- Antibody staining
- Availability
- Bioluminescence Presentations
- Birds of Melanesia
- CDNA Synthesis
- CDNA clean up
- Career Development
- Cephalopod Divergence Times
- Change ownership of linux files
- Chemicals and Reagents
- Chiton
- Cnidaria
- Collecting Sites
- Collecting Sites (Celia)
- Collection Priorities
- Computer protocols
- Connect to knot using the galaxy user login
- Connect to macroevolution
- Convergent bioluminescence
- Create conversion tool for SRA files to SFF or FASTQ formats
- Culturing
- Culturing Photeros annecohenae
- Cypridinidae Phylogeny
- Day by Day
- Dimensions of Biodiversity
- Dispersed photoreception in cephalopod skin
- Dissecting for RNA preps
- Documenting and submitting an 'official' assembly protocol
- Dot Blot for Probe Quantification
- Example
- Eye-Depth Correlation
- Eye-depth data collection
- Fasta format
- Fede Haliplanella Raw Data
- Fede Hydra Scrunch Ptx
- Feeding
- Flights
- Florida Keys Collecting Trip
- Florida Keys Trip
- Fong's Aurelia data
- Ftp upload
- Full Grant Proposals
- G-q alpha
- Galaxy Development Priorities
- Galaxy Instances
- Galaxy Problems to address
- Galaxy Tool Tips and Troubleshooting
- Galaxy illumina Data Processing
- Glycerol Stocks
- Gold's Anthopleura data
- Haliplanella Feeding Rates
- How to do things like ordering and shipping
- HydraOpsinGFP
- Hydra gene gun
- If You Love Musicals At Some Stage In Life You ll Want To Plan A Pilgrimage To New York To Catch A Broadway Show
- Illumina Transcriptome - Clean up and assembly
- Illumina preps
- Implement Beast
- Implement Davis' Illumina Scripts
- Implement EvolMap -- Assigned to Roger
- Implement Hammstr - an external pipeline of tools
- Implement NCBI's tools from SRA Toolkit
- Implement RAxML
- Implement TransAbyss pipeline
- Implement phylogenetics scripts like format converters and concatenation tools
- Implement r8s
- Implement sequence alignment tools, MUSCLE MAFFT PROALIGN
- In situ hybridization
- Information Nicole needs to complete permit applications
- Install cron jobs to clear deleted datasets
- Jaz instruction manual
- Jaz software serial number
- KML dorms
- Katia Jindrich 2011
- Kornicker 1981
- Kornicker 1999
- Lab Inventory
- Lab Inventory test
- Lab Papers
- Lab Projects
- Lab Publications
- Lab Theses
- Lampe Speiser RRH
- Lampe Speiser R file
- Leptochiton
- List of metazoa genomes for opsinomics
- Lodging
- Logistics
- Luciferase Assay
- Macroevolution URL upload
- Macroevolution url upload
- Maeda 1996
- Main Page
- Molecular protocols
- Mopalia
- Nematocyte Capture
- Nematocyte firing
- New Euphilomedes species from Panama
- New tools since Osiris 1.0
- Newbler parameter '-a' (minimum contig length) not working
- Newbler tool doesn't assemble FASTQ files as it claims to
- Newbler tool doesn't recognize FASTQ files as it claims to
- Notes
- Nuttalina
- Oakley-nas1 URL upload
- OakleyDIG 2000
- Oakley DIG 2000 reviews
- Oakley Explorers 1998
- Oakley NRSA 2001
- Oakley NRSA reviews
- Oakley PADI 1998
- Oakley Sigma 1997
- Oakley Thesis Proposal 1998
- Opsin
- Opsinomics
- Opsins from full genomes
- Optics protocols
- Order Primers from Integrated DNA Technology (IDT)
- Organismal protocols
- Origin and evolution of chiton eyes
- Origin of chiton eyes
- Ortholog Detection in Galaxy
- Osiris Development
- Ostracod Taxonomy
- Others
- PTW
- Packing List
- Packing List (tentative)
- Pancrustacean Divergence Times
- Pancrustacean MegaTree
- Pankey DIG 2011
- Pankey Predoc 2007
- Permits
- Photos of Feeding Rate Subjects
- Phototransduction gene information
- Phylocatenator.pl
- Phylogenomics in Galaxy
- Pischedda DIG 2007 (Rice lab)
- Plachetzki AMS 2008
- Plachetzki DIG 2006
- Plachetzki DIG 2006 reviews
- Plachetzki nematocyte firing
- Plat BMC cover letter
- Plat BMC main text
- Plat BMC supplement 1
- Plat BMC supplement 2
- Porichthys notatus
- Possible Collecting Sites
- Pouring an agarose gel
- Program to find probes
- Protein collection and prep for proteomics (Ostracods)
- Protocol 1
- Protocols
- Publication Library
- Pull sequences from old 454 assembly
- RNA extraction
- R file requires myFluc
- R file requires myFluc2
- Ramirez Predoc 2007
- Recently enabled tools
- Recording behavioral data
- Restarting Galaxy
- Restarting Galaxy after adding a new tool
- Rivera 2005 PPFP
- Rivera sponge eyes
- Salmonid Divergence Times
- Sarsielloid Molecular & Morphological
- Sarsielloid Morphological Matrix
- Scp upload
- Sectioning
- Sequence Run Inventory
- Serb 2002 PPFP
- Skogsbergia lerneri
- Slide Mounting
- Solution Recipes
- Sources for luciferin (coelenterizine)
- Sources for luciferin (vargulin)
- Spady 2004 PPFP
- Species List
- Stenoplax
- Step 1 - Separating Multiplexed files into Libraries
- Step 2 - Filter Data and Assemble
- Student Grants Database
- Syme Cylindroleberid Checklist
- Target Family - Cytherettidae
- Target species Eusarsiella disparalis
- Target species Eusarsiella ozotothrix
- Target species Eusarsiella spinosa
- Target species Eusarsiella texana
- Target species Eusarsiella zostericola
- Target species Harbansus paucichelatus
- Target species Skogsbergia lerneri
- Tentative schedule
- Tess' Plan
- Test
- The Data Dump Paper
- The very basics
- Things To Do
- Tide Chart Tom's Harbor Cut
- Tonicia
- Travel Arrangements
- TreeVector
- Trip Schedule
- Trip schedule
- UCSB Galaxy Documentation
- Updating Lab Website
- Upgrade FastQC Tool
- Upload data to IlluminaData
- Uploading data
- Using Jaz to standardize light intensity
- Using Trinity Assembler
- Using UCSB Galaxy
- Vargula tsujii
- Version tracking
- Viewing Trees
- Western Blot
- Wiki Tips
